We checked each site by taking ice cores and observing the algae biomass to determine the likelihood of krill living under the sea ice in each location. We also used a Remotely Operated Vehicle (ROV) with cameras attached to observe the abundance of krill under the sea ice. If krill were present we used on the sea ice floe a zooplankton pump, called MASMA, according to Meyer et al. 2009, whereas at the edge of the floe column a custom-built fish pump system was used to collect krill near the surface. The Aqualife Biostream BP40 fish pump was capable of pumping up to 1300 litres per minute without harming animals that pass through the pump. For much of the voyage it was operated from the ctd room and at this increased suction head it ran at about 500 litres per minute. Krill were caught at ice stations 2, 6, 7 and 8. The Krill Sample-Overview.xls file contains information regarding how many krill were caught at each ice stations, who was involved and related information. The SIPEX II Krill Voyage Report.docx contains information about the various issues that were encountered during the voyage. It also contains information from the Bottom Krill experiment, which has its own dataset and metadata record. It is duplicated in both datasets. The larvae were used for a growth experiment using the IGR method and after length measurements frozen for carbon, nitrogen, lipids, stomach and gut content analysis. The total and carapace length were determined of juveniles as well as their digestive gland size. Animals were than dissected and tissues frozen at -80C for further analysis (see above). These condition parameters will be discussed in relation to physical and biological environmental parameters of the ice floe (e.g. sea ice thickness, snow coverage, under ice topography and biomass). When this data is analysed, the dataset will be updated to include analysed versions of the data listed in the Krill Sample-Overview.xls file. Also included in the dataset are technical documents and manuals pertaining to the fish pump that was used. Meyer B et al. 2009. Limnol Oceanogr 54:1595-1614

This dataset contains data resulting from the measurement of brine samples extracted from the sea-ice during the 2012 SIPEX 2 (Sea Ice Physics and Ecosystems Experiment) marine science voyage. The Brine was collected from partially drilled holes in the ice using suction. In some of these cases the brine analysed came from holes which correspond to permeability measurements. In these cases a core number is associated with the brine data which will correspond to the core number in the permeability data set found in the master core list Excel file. The purpose of this data set was to act as a first step to quantify the effect that extra cellular carbon may have on the physical properties of brine and sea ice. At least 1 litre of brine was collected from each partial hole for analysis. The total sample was split for the following analyses. Viscosity of the brine was measured before and after filtering out any biological components that may have been in solution or otherwise in order to assess whether or not extracellular carbon has an effect on fluid flow in sea ice. What was not used for viscosity measurements was used for chlorophyll, extra-cellular carbon and bacterial analysis to gain a sense of the level and type of biology and biological compounds in the brine to then be compared to the measured physical properties. The biological analysis will be carried out at the university of Tasmania by Sarah Ugalde. On many of these samples the complex permittivity of the brine was also measured and the data can be found in the Relative_Permitivity_of_Brine folder with each sample corresponding in core number. For info on the permittivity measurements please see the metadata in that folder.

CTD casts were taken through holes in the ice floe at various locations during ice stations 3, 4, 6 and 7. Two Seabird 37M microcats were used. One microcat did not log time, whereas the other did. An Idronaut Ocean Seven 304 CTD (manufactured in Italy) was used during ice stations 7 and 8. CSV files are provided. A single file represents a set of casts at a single location. The files are organised in columns as: Column 1: Temperature (C) Column 2: Conductivity Column 3: Pressure Column 4: Salinity (ppt) Column 5: Date (DD MMM YYYY), UTC Column 6: Time (HH:MM:SS), UTC For the Seabird 37M (2006 model) belonging to Dr Hutchings, time on the microcat is set to UTC, to the second. For the AWI Seabird 37M (1999 model), time is not output. This microcat dribbled data to a laptop at 1Hz. Ice Station 3: A microcat was placed at about 7m below the surface (5m below the ice) at Ridge site 1. Salinity sensor was iced up on this cast Ice Station 4: Cast 1: 100m cast through the ROV hole on Oct 6th 10:30 UTC. Cast 2: 10m cast at the trace gas site, on Oct 8th 06 UTC. Cast 3: 100m cast at the trace gas site, on Oct 8th 09:30 UTC. Ice Station 6: Cast 1: 100m at ridge site 1 , on Oct 13th 03 UTC. Cast 2: 10m casts at Trace Gas site, on Oct 13th 04:30 UTC. F Note that salinity sensor was iced on 10m cast at trace gas site. Cast 3: Deployment at 7m depth at ridge site 1, on Oct 13th 06UTC. Cast 4: 100m cast at ridge site 1, on Oct 14th 23 UTC. Note that microcat stopped recording at about 65m in downcast. Ice Station 7: - CTD casts with Seabird 37M microcat: Cast 1: 100m cast, Transducer Hole A, at active ridge. 20th Oct 03:00Z. Power failed 60m into downcast. Cast 2: 30m cast, Y-axis 50m core hole. 20th Oct 05:15Z Cast 3: 40m cast followed by 100m cast. Y-axis 100m ADCP hole. 21st Oct 00:00Z. Power failed at 60m. Cast 4: 15m casts. Y-axis 50m core hole. 21st Oct 05:15Z Cast 5: ROV Hole. With Polly's pinger. 21 Oct 09:30Z. Power failure at 86m. - CTD casts with Gerhard Dieckman's Seabird microcat. Note this microcat does not output time, but dribbles 1Hz data. Cast 6: Transponder Hole near new ridge. 23rd Oct 06:30Z. Cast 7: Trace Metal / Bio site. 23rd Oct 07:30Z. Cast 8: At ROV Hole Ice Station 8: Synoptic (3 hourly) CTD casts Roster of CTD casts is contained in file 'CTD_time.xls'. This table is pasted below. Please note that the names of excel files containing the raw data are presented in this table. Filenames: Ice Station 3: Filename: 20121004/20121004_IceStation3_microcat_all.dat. Ice Station 4: Cast 1: Filename: 20121006_IceStation4_microcat_cast1.dat Cast 2: Filename: 20121008_IceStation4_microcat_cast2_gerhard.dat Cast 3: Filename: 20121008_IceStation4_microcat_cast3_gerhard.dat Ice Station 6: Cast 1: Filename: 20121013_IceStation6_microcat_cast1_ridge.dat Cast 2: Filename: 20121013_IceStation6_microcat_cast2_gerhard.dat Cast 3: Filename: 20121013_IceStation6_gerhardCat_ridge_052700.dat Cast 4: Filename: 20121014_IceStation6_microcat_ridge.dat Ice Station 7: CTD casts with Seabird 37M microcat: Cast 1: Filename: 20121020_IceStation7_microcat_transponder_newRidge.dat Cast 2: Filename: 20121020_IceStation7_microcat_50m.dat Cast 3: Filename: 20121021_Station7_100m.dat Cast 4: Filename: 20121021_Station7_50m.dat Cast 5: Filename: 20121021_Station7_ROVhole_plusPolly2_tryagain.dat CTD casts with the AWI Seabird microcat: Cast 6: Filename: 20121023_gerhardCat.dat Cast 7: Filename: 20121023_gerhardCat_hole2.dat Cast 8: Filename: CTD_jenny_20121023.xls Ice Station 8: Synoptic (3 hourly) CTD casts: The data files are: CTD_jenny_20121023.xls CTD_jenny_20121028.xls CTD_jenny_20121030.xls CTD_jenny_20121031.xls CTD_jenny_20121101(1).xls CTD_jenny_20121101(2).xls CTD_jenny_20121102.xls CTD_jenny_20121103.xls CTD_jenny_20121104.xls

This dataset contains data relating to an experimental method in which sea-ice samples were measured in an S-band microwave waveguide. This was conducted as a part of the 2012 SIPEX 2 (Sea Ice Physics and Ecosystems EXperiment) marine science voyage. A specially designed waveguide apparatus was connected to an Agilent FieldFox Portable Network Analyzer. Small parallelopipeds (7 cm X 3 cm X 1.9 cm) of sea ice were cut with a hand saw in a specially designed jig which holds an initially cylindrical core. The samples were placed at the end of the waveguide, configured to measure the vertical component of the effective complex permittivity tensor, and microwaves of frequency 2.9 GHz were sent down the tube. The samples were sized precisely to fit snugly in the end of the waveguide in order to minimize spurious reflections. The FieldFox recorded the coefficients of the scattering matrix, from which the complex permittivity can be computed. Sample temperature was taken both before and immediately after insertion into the waveguide. In order to assess the presence of off-vertical components of the electromagnetic field and how they may affect the measurements, a second sample was prepared with an orthogonal orientation, adjacent to the first sample. The same microwave measurements were taken on the second sample, to be later correlated with those from the first sample. The samples were stored in the freezer for later crystallographic analysis, and subsequently melted for salinity measurements. Prior to melting the samples were measured using callipers to determine their dimensions precisely. Samples were measured along each face at their minimum and maximum point for their width in the direction of propagation. In most cases samples were measured in all dimensions for better error analysis. A thin vertical section, approximately 5mm thick, was taken from each microwave sample stored for analysis. These sections were placed between a pair of cross polarized plates and photographed. Photos of the crystallography cores can be found in the crystallography folder, in a sub folder titled microwave. Each photo also contains a tag indicating the core number, site taken, date, as well as a V or an H indicating whether the sample was used for measurement of the vertical (V) or off-vertical (H) response. The scattering parameters recorded by the Field Fox can be found in the Data folder. Each file is named according to the microwave core measurement it represents and whether the measurement was of the vertical (V) or off-vertical (H) response. Each contains a standard S11 scattering parameter, stored as a comma separated value (CSV) file. Raw data can be found in the raw folder, and data that has been processed for ease of Matlab import can be found in the Reformatted_for_matlab folder. This processing involves taking output data that by default has four entries in a single column vector and remapping the data to create a four column matrix, each with a single entry. Recorded values for each microwave sample can be found in the Master_Core_List.xls Excel spreadsheet, within the Microwave worksheet. This worksheet was generated directly from notebook data, and contains the date, core number, depth of interface between the two collected samples, the minimum, maximum, and average thickness along the axis of propagation, The recorded temperatures from before and after measurement, the salinity, and calculated brine volume fraction. Finally, the worksheet contains notes, and a column to indicate whether we believe this data is somehow bad. Measurement information for thicknesses along other axis than that of propagation can be found in notes, but this data may at some stage be incorporated into a separate column. Please see the notes section for reasons why a data point was determined invalid. Typically this was due to the corresponding sample breaking while cutting into the parallelepiped shape. Scans of the original notebooks containing measured salinity values, thicknesses, and temperatures from which the Permeability worksheet were created are provided in the notebooks directory.

A 600KHz Teledyne RDI Workhorse Sentinel ADCP was deployed through a 10inch auger hole, flush with the base of the ice, looking downwards. At ice stations 2, 3, and 4 the deployment locations was Ridge site 1, the ridge site closest to the ship. At ice station 7 there were 4 different deployment locations: - Transducer Hole A, by active ridge on 6th October 2012; - Trace Metal / Bio Site; - 100m Core site of ice-physics transect; - Transducer Hole A, re-drilled on 7th October 2012. Length of deployment varies from stations to station and was limited by AUV operations, when our ADCP was switched off. Files contain the data collected in raw format. This format can be read by Teledyne WinSC software. Data files are stored in folders by ice station (see below).

DC Electrical: In order to relate the fluid permeability to the electrical properties of sea ice, we also took measurements of the vertical component of the DC electrical conductivity tensor of sea ice. Cores extending to the bottom of an ice floe were taken and laid out holder. With the exception of sites 7 and 8 where we encountered a slush layer below the hard ice and could not core down to the ocean. The core bottom was determined at sites 7 and 8 to be the ice slush interface. Immediately upon extraction, holes that fit our thermistor probes were drilled every ten centimetres and a temperature profile was taken. Subsequently, slightly larger holes were drilled which fit our electrical probes (stainless steel nails). An AEMC Earth Resistivity Meter was then used to measure the resistance over 10 cm sections of the core (usually offset by 5 cm so that the measured temperature was in the centre of the section where electrical resistance was measured). The cores used in resistance measurements were taken very close to where the crystallographic cores were taken. In almost all cases the cores extracted for electrical measurements were also used for crystallographic analysis, so that there was an exact match of electrical properties with crystal structure. In such cases the DC electrical cores were then moved to a -20 degree C cold room for further processing immediately after measurements in the field. A thin vertical section, approximately 3mm thick, was taken from each of the cores stored for analysis. These sections were placed between a pair of cross polarized plates and photographed. Each photo was labelled with the core and date it was taken, and was photographed with a meter stick alongside for scale. After the thin sections were photographed, the remaining samples were melted to measure salinity. Some of the melted sea ice was saved for later O18 analysis to distinguish samples containing snow ice from those containing marine granular ice. The temperature and salinities we are then used to calculate brine volume fractions along the 10 cm sections of the core. The DC conductivity data collected can be found in the Electrical tab of the Master_Core_List.xls Excel file. The raw data can be found in the scans of our field note books located in the folder named notebooks. In the spread sheet the measured resistances of the 10 cm sections, temperatures, salinities and corresponding brine volume fractions are listed per core. For each core the supporting crystallography core number can be found in the crystallography column of the spread sheet. The photos of the crystallography cores can be found in the crystallography folder, separated into subfolders labelled with the site and core number, Each photo also contains a tag indicating the core number , site taken , date, and what depth range this covers. Tags may not contain a depth range for cores less than 1 meter. Please see the meter stick in each photo for scale.

This dataset contains sea ice surface brightness temperatures using a portable passive-microwave radiometer operating at 36Ghz-H,V mounted to the undercarriage of a Squirrel helicopter during SIPEX 2, 2012. This radiometer is the same sensor as satellite passive-microwave radiometer AMSR-E and AMSR2. Our passive-microwave radiometer is launched on the same helicopter as Jan Lieser's (RAPPAL), so please see the "SIPEX-2 RAPPLS Surveys (Radar, Aerial Photography, Pyrometer, and Laser Scanning system)" metadata file for details of the aircraft. The RAPPLS dataset also contains track (GPS position) and altitude data, which can be used in conjunction with this dataset. The CSV files in this dataset are the raw files as output by the sensor. These raw data files show only the relevant parameters (time and brightness temperatures).

Zooplankton were collected during the winter-spring transition during two cruises of the Aurora Australis: SIPEX in 2007 and SIPEX II in 2012. The umbrella net was 2 metres long, 28 cm2 mouth area and mesh size of 100 um. The net was lowered through holes drilled through the pack ice and lowered to 100 m. It was pulled slowly by hand to the surface, closed and brought back through the ice hole. The contents were preserved in 5% buffered formaldehyde and examined under a Leica M12 in the laboratory. Species were identified to the lowest taxon possible.

Note - these data should be used with caution. The chief investigator for the dataset has indicated that a better quality dataset exists, but the AADC have been unable to attain it for archive. Matlab file containing raw data snowfall data collected aboard the RV Aurora Australis using Campbell Scientific dataloggers. Two Wenglor brand YHO3NCT8 photoelectric sensors were mounted on the forward railing of the ship's "monkey deck". The beam heights of the sensors were 18cm above the upper railing, oriented parallel to the railing (perpendicular to the long-axis of the ship), approximately 6m apart. The port sensor was purchased in 2012, from a batch of these sensors manufactured in a new Eastern European factory while the starboard sensor came from a lot purchased in 2007, manufactured in Wenglor's German factory and extensively tested for use in snow. Pulse counts measured by the port sensor were consistently lower in magnitude than those recorded during the same interval by the starboard sensor. It is not currently clear whether this was due to the ship's tendency to be oriented with the wind to starboard, or whether this is due to differences in instrument characteristics. Data recorded between 17/9/2012 and 26/10/2012 was logged by a CR10x datalogger. Data recorded after 26/10/2012 was logged by a CR1000 datalogger. Information on converting the pulse-count data into a mass flux of snow is contained in Leonard, K.C. and R.I. Cullather (2008) Snowfall measurements in the Amundsen and Bellingshausen Seas, Antarctica. Proceedings of the Eastern Snow Conference, 65, 87 - 98. These two datasets are identical, but have been separated into two matlab structures contained in the same "shipsnow.mat" file: "snow" and "snow2". Data contained in these structures includes the following variables, with units: Datenm: matlab 'datenumber'. Change to conventional format using the "datevec()" command Port: beam interruptions per 10s interval, port-side sensor Stbd: beam interruptions per 10s interval, starboard-side sensor Ptemp: temperature of a thermistor mounted beneath the datalogger's wiring panel. The datalogger was contained in a fiberglass box, strapped into the starboard side observation shelter on the monkey deck. Volt: voltage received and transmitted by the datalogger. Power came from a 12v 1Ah converter plugged into the ship's power supply. The data have also been reformatted into two csv files.

We observed total thickness (snow thickness + ice thickness) of sea-ice floes along 100m transects using an electromagnetic (EM) sensor. The data were read from the EM and written by hand into a log book as we moved along the transect. They were then transferred into an Excel spreadsheet. The parameters included are: - distance along transect - conductivity (vertical) - conductivity (horizontal) - total thickness (derived from vertical and horizontal conductivities)