A hierarchical, 3-level, nested design was used. The highest hierarchical level consisted of six locations. Two of these locations, Brown Bay and Shannon Bay, have been contaminated with heavy metals (Stark et al., 2003; Snape et al., 2001); Brown Bay has also been contaminated with petroleum hydrocarbons (Snape et al., 2001). The remaining four locations are more distant from Casey Station and were used as control locations. These locations were Denison Island, Odbert Island, O'Brien Bay and Sparkes Bay. A full description of these sites is given below. Within each location two sites were selected approximately 100 m apart. Within each site, two plots were sampled (~ 10 m apart). Although the sampling program had been designed for four replicates within each plot, the patchy distribution of bottom sediments in the Windmill Islands restricted this to two replicate samples (~ 1 m apart) per plot. Samples were collected using an Eckman grab sampler, deployed from a boat. To minimise the potential influence of water depth, all samples were collected from 8 m water depth. Samples were collected within a three day period in early February when no sea-ice was present. Diatom data are presented as the relative abundances of benthic species. Samples are identified xyz where x = first initial of sample location (or first 2 initials where 2 locations start with the same letter), y = plot number (plots 1 and 2 represent site 1, while plots 3 and 4 are from site 2), and z = replicate number (a or b). Abbreviations used for species are shown in the separate file sp_list. This work was completed as part of ASAC project 1130 (ASAC_1130) and project 2201 (ASAC_2201). Public summary from project 1130: Algal mats grow on sea floor in most shallow marine environments. They are thought to contribute more than half of the total primary production in many of these areas, making them a critical food source for invertebrates and some fish. We will establish how important they are in Antarctic marine environments and determine the effects of local sewerage and tip site pollution. We will also investigate the impact on the algal mats of the additional UV radiation which results from the ozone hole. Public summary from project 2201: As a signatory to the Protocol on Environmental Protection to the Antarctic Treaty Australia is committed to comprehensive protection of the Antarctic environment. This protocol requires that activities in the Antarctic shall be planned and conducted on the basis of information sufficient to make prior assessments of, and informed judgements about, their possible impacts on the Antarctic environment. Most of our activities in the Antarctic occur along the narrow fringe of ice-free rock adjacent to the sea and many of our activities have the potential to cause environmental harm to marine life. The Antarctic seas support the most complex and biologically diverse plant and animal communities of the region. However, very little is known about them and there is certainly not sufficient known to make informed judgements about possible environmental impacts The animals and plants of the sea-bed are widely accepted as being the most appropriate part of the marine ecosystem for indicating disturbance caused by local sources. Attached sea-bed organisms have a fixed spatial relationship with a given place so they must either endure conditions or die. Once lost from a site recolonisation takes some time, as a consequence the structure of sea-bed communities reflect not only present conditions but they can also integrate conditions in the past. In contrast, fish and planktonic organisms can move freely so their site of capture does not indicate a long residence time at that location. Because sea-bed communities are particularly diverse they contain species with widely differing life strategies, as a result different species can have very different levels of tolerance to stress; this leads to a range of subtle changes in community structure as a response to gradually increasing disturbance, rather than an all or nothing response. This project will examine sea-bed communities near our stations to determine how seriously they are affected by human activities. This information will be used to set priorities for improving operational procedures to reduce the risk of further environmental damage. The fields in this dataset are: Species Site Abundance Benthic

Sediment samples were collected with an Eckamn grab from four locations within the Windmill Islands (Herring Island, O'Connor Island, Shannon Bay and Brown Bay). A weekly sampling program was performed over a 10 week period, however not all locations could be accessed each time due to sea-ice conditions. All samples were collected at an 8 m water depth. Preliminary analysis of fortnightly samples are presented here. Diatom data are given as relative abundances of benthic diatom species. The abbreviations used to identify species are explained in the accompanying file sp_list. This work was completed as part of ASAC project 1130 (ASAC_1130) and project 2201 (ASAC_2201). Public summary from project 1130: Algal mats grow on sea floor in most shallow marine environments. They are thought to contribute more than half of the total primary production in many of these areas, making them a critical food source for invertebrates and some fish. We will establish how important they are in Antarctic marine environments and determine the effects of local sewerage and tip site pollution. We will also investigate the impact on the algal mats of the additional UV radiation which results from the ozone hole. Public summary from project 2201: As a signatory to the Protocol on Environmental Protection to the Antarctic Treaty Australia is committed to comprehensive protection of the Antarctic environment. This protocol requires that activities in the Antarctic shall be planned and conducted on the basis of information sufficient to make prior assessments of, and informed judgements about, their possible impacts on the Antarctic environment. Most of our activities in the Antarctic occur along the narrow fringe of ice-free rock adjacent to the sea and many of our activities have the potential to cause environmental harm to marine life. The Antarctic seas support the most complex and biologically diverse plant and animal communities of the region. However, very little is known about them and there is certainly not sufficient known to make informed judgements about possible environmental impacts. The animals and plants of the sea-bed are widely accepted as being the most appropriate part of the marine ecosystem for indicating disturbance caused by local sources. Attached sea-bed organisms have a fixed spatial relationship with a given place so they must either endure conditions or die. Once lost from a site recolonisation takes some time, as a consequence the structure of sea-bed communities reflect not only present conditions but they can also integrate conditions in the past. In contrast, fish and planktonic organisms can move freely so their site of capture does not indicate a long residence time at that location. Because sea-bed communities are particularly diverse they contain species with widely differing life strategies, as a result different species can have very different levels of tolerance to stress; this leads to a range of subtle changes in community structure as a response to gradually increasing disturbance, rather than an all or nothing response. This project will examine sea-bed communities near our stations to determine how seriously they are affected by human activities. This information will be used to set priorities for improving operational procedures to reduce the risk of further environmental damage. The fields in this dataset are: Species Site Abundance Benthic Date Location

Marine sediment samples were obtained from box corer, Smith-MacIntyre and Van Veen grabs. Samples were named by: 1. CEAMARC site (e.g. 16) 2. Instrument (e.g. box corer = BC; Smith-MacIntyre = GRSM; Van Veen = GRVV) 3. Sequence of sample at each site (e.g. first sample = 01; second sample = 02) So 16BC02 is the second sample at CEAMARC site 16, using the box corer. From each successful sample, a sub-sample was obtained: 1. 200 g surface scrape (labelled A) 2. short (20 cm) push core (labelled B) 3. bulk (labelled Bulk) 4. rocks-only (labelled Rocks) e.g. 16BC02A is a 200 g surface scrape subsample from 16BC02. 16BC02B is a push core subsample from 16BC02 16BC02Bulk is a bulk sediment subsample from 16BC02. 16BC02Rocks is a rocks-only subsample from 16BC02. Post-cruise analyses: 1. Grain size 2. Total organic carbon 3. Total organic nitrogen 4. Carbon and nitrogen isotopes 5. Biogenic silica and carbonate 6. Physical properties of cores 7. Zircon dating 8. X-rays for infauna and sedimentary structures Added by Alix Post - March 2010: Seabed samples were collected from 52 sites across the George V Shelf. Most samples were collected with a box corer (BC), though more gravelly sediments required a Smith-McIntyre (GRSM) or Van-Veen grab (GRVV) as indicated by the station name in the spreadsheet. A small volume of sediment was frozen following collection and later analysed for organic carbon and nitrogen content, in addition to carbon and nitrogen isotopes. Organic carbon and nitrogen values are express as percent of the total sediment, and have been corrected back to the total sediment volume. Isotopic values are expressed as values per mil. Where sufficient volume of sediment was collected, a mini-core was pushed into the sediment to provide a depth profile of the sample, and a bulk surface sample was also taken. Surface sediment samples analysed for sieve grainsize, calcium carbonate and biogenic silica content. All values are expressed as percentage values. The naming convention of the samples describes the type of gear used and the nature of the sediment analysed: e.g. 01BC01Bulk is a bulk sediment sample collected with a box core; 38GRVV02B/0-1 is a slice taken from 0 to 1 cm at the top of a van veen grab.

This metadata record covers ASAC projects 113, 191 and 625. (ASAC_113, ASAC_191, ASAC_625). The total lipid, fatty acid, sterol and pigment composition of water column particulates collected near the Australian Antarctic Base, Davis Station, were analysed over five summer seasons (1988-93) using capillary GC, GC-MS, TLC-FID and HPLC. Polar lipids were the dominant lipid class. Maximum lipid concentrations usually occurred in samples collected in December and January and corresponded with increased algal biomass. Both lipid profiles and microscopic observations showed significant variation in algal biomass and community structure in the water column during each season and on an interannual basis. During the period of diatom blooms (predominantly Nitzschia species) the dominant sterol and fatty acid were trans-22-dehydrocholesterol and 20:5w3, accompanied by a high 16:1w7 to 16:0 ratio. Very high polyunsaturated fatty acid and total lipid concentrations were associated with diatom blooms in the area. Bacterial markers increased late in all seasons after the summer algal blooms. Long chain C30 sterols also increased during the latter half of all seasons. Fjord samples collected in the area reflected greater biomass and diversity in algal and bacterial makers than coastal sites. Signature lipids for the alga Phaeocystis pouchetii, thought to be a major alga in Antarctic waters, were identified in field samples over the five summer seasons studied. Methods Study site Davis Base is situated on the Vestfold Hills, Antarctica and incorporates numerous lakes and fjords (Fig. 1). Samples of water column particulate matter were collected during five summer seasons (1988-93), 500 meters off-shore from Magnetic Island, situated 5 km NW of Davis. Three other sampling areas were situated in the fjords of the Vestfold hills and include two sites in Ellis Fjord, one midway along Ellis Fjord and one near Ellis Fjord mouth and one sample midway along Long Fjord (Fig. 1). These fjords are protected from the marine environment, but are both marine fjords. Davis Station and Magnetic Island were used for the weekly sample sites. The mouth of Long Fjord, the mouth of Ellis Fjord, midway down Long Fjord, the deep basin in Ellis Fjord, O'Gorman Rocks and Hawker island (ocean side) were used for monthly samples. Field collection There was an initial pilot season in 1988-89, which was followed by two more detailed studies in the summers of 1989-90 and 1990-91. Four samples was also analysed from the 1991-92 and five from the 1992-93 summer seasons. During the initial pilot study at Magnetic Island in the 1988-89 summer, three water column particle samples were taken for lipid analyses. The 1989-90 and 1990-91 summer field seasons incorporated weekly sampling of the water column particulates at Magnetic Island. The phytoplankton in the fjords were studied during the summers of 1989-90 and 1990-91. The three sites that were chosen were all sampled three times in each season. Samples were also collected during the 1989-90 and 1990-91 seasons from the Magnetic Island and Fjord site s for pigment analyses. Three and five samples were collected respectively in the 1991-92 and 1992-93 seasons. Samples were also taken for microscopic analyses. For lipid analyses 30-40 liter water column particulate samples were collected at a depth of 10 m. A Seastar or INFILTREX water sampler was used in situ to filter the water through a 14.2 cm Schleicher and Schuell glass fibre filter over a three to four hour period. All filters used during sampling were preheated in a muffle furnace at 500 degrees C overnight to minimise contamination. For pigment analyses 2 to 4 litres were filtered through glass fibre filters (4.7 cm GF/F, nominal pore size 0.7 micro meters). The samples were frozen at -20 degrees C until extraction.

Sediment samples were collected from nine points along 3 parallel transects within the contaminated Brown Bay. The diatom spreadsheet (diatom_data) contains both initial diatom counts and the relative abundance of benthic species. The abbreviation used to identify species are explained in the separate file called sp_list. Metal, Total Purgeable Hydrocarbons (TPH), and grain-size data are all presented as separate files. This work was completed as part of ASAC project 1130 (ASAC_1130) and project 2201 (ASAC_2201). Public summary from project 1130: Algal mats grow on sea floor in most shallow marine environments. They are thought to contribute more than half of the total primary production in many of these areas, making them a critical food source for invertebrates and some fish. We will establish how important they are in Antarctic marine environments and determine the effects of local sewerage and tip-site pollution. We will also investigate the impact on the algal mats of the additional UV radiation which results from the ozone hole. Public summary from project 2201: As a signatory to the Protocol on Environmental Protection to the Antarctic Treaty Australia is committed to comprehensive protection of the Antarctic environment. This protocol requires that activities in the Antarctic shall be planned and conducted on the basis of information sufficient to make prior assessments of, and informed judgements about, their possible impacts on the Antarctic environment. Most of our activities in the Antarctic occur along the narrow fringe of ice-free rock adjacent to the sea and many of our activities have the potential to cause environmental harm to marine life. The Antarctic seas support the most complex and biologically diverse plant and animal communities of the region. However, very little is known about them and there is certainly not sufficient known to make informed judgements about possible environmental impacts The animals and plants of the sea-bed are widely accepted as being the most appropriate part of the marine ecosystem for indicating disturbance caused by local sources. Attached sea-bed organisms have a fixed spatial relationship with a given place so they must either endure conditions or die. Once lost from a site recolonisation takes some time, as a consequence the structure of sea-bed communities reflect not only present conditions but they can also integrate conditions in the past. In contrast, fish and planktonic organisms can move freely so their site of capture does not indicate a long residence time at that location. Because sea-bed communities are particularly diverse they contain species with widely differing life strategies, as a result different species can have very different levels of tolerance to stress; this leads to a range of subtle changes in community structure as a response to gradually increasing disturbance, rather than an all or nothing response. This project will examine sea-bed communities near our stations to determine how seriously they are affected by human activities. This information will be used to set priorities for improving operational procedures to reduce the risk of further environmental damage. The fields in this dataset are: bbg_lat spreadsheet Site Latitude Longitude Easting Northing Diatoms spreadsheet Species Site Abundance Transect Metals Spreadsheet Sample Antimony Arsenic Cadmium Chromium Copper Iron Lead Manganese Mercury Nickel Silver Tin Zinc Total Organic Carbon Easting Northing TPH Spreadsheet Site Total Purgeable Hydrocarbons Fraction of Purgeable Hydrocarbons

Marine soft-sediment assemblages were sampled from shallow (5 - 35m) nearshore regions around Casey Station, Windmill Islands, East Antarctica in winter 1998, using a van-Veen grab (surface area 20 x 25 cm). Samples were sieved through a 1 mm mesh and sorted to species where possible. A hierarchical, spatially nested sampling design was used with locations (km's apart), sites (100s of metres apart). Two potentially impacted, polluted locations (Shannon Bay - adjacent to a sewage outfall; and Brown Bay - adjacent to an old garbage tip) were compared with a control location in O'Brien Bay. Data were analysed using both multivariate and univariate statistical methods. Significant differences in assemblages were found between locations and between sites within locations. Significant differences in the abundances of taxa at several taxonomic levels (species, family, order, phylum) were also found at both spatial scales. Significant differences were also detected between the polluted and control locations. These samples were collected as part of a larger program examining human impacts in marine benthic assemblages at Casey Station. These samples were used in an analysis of temporal changes in soft-sediment assemblages at Casey. A total of 30 grab samples were collected in this survey. The fields in this dataset are: Location Site Date Site/Replicate Species

Marine soft-sediment assemblages were sampled from shallow (5 - 35m) nearshore regions around Casey Station, Windmill Islands, East Antarctica in late summer (Feb-March) 1997, using a van-Veen grab (surface area 20 x 25 cm). Samples were sieved through a 1 mm mesh and sorted to species where possible. A hierarchical, spatially nested sampling design was used with locations (km's apart), sites (100s of metres apart), and plots (10s of m). Two potentially impacted, polluted locations (adjacent to a sewage outfall and an old garbage tip) were compared with two control locations. Data was analysed using both multivariate and univariate statistical methods. Significant differences in assemblages were found between locations and between sites within locations. Significant differences in the abundances of taxa at several taxonomic levels (species, family, order, phylum) were found at all three spatial scales. Significant differences were also detected between the polluted and control locations. Compared with other Antarctic locations, the assemblages were dominated by crustaceans (90 to 97 % of individuals) and there was a paucity of polychaete fauna at the locations sampled. This study represents the first description of benthic assemblages from this region. A total of 70 samples are included in this data set. Also links to ASAC 1100. The fields in this dataset are: Location Site Plot/replicate Weight Volume Species

Antarctic sediments and sea-ice are important regulators in global biogeochemical and atmospheric cycles. These ecosystems contain a diverse range of bacteria whose biogeochemical roles remains largely unknown and which inhabit what are continually low temperature habitats. An integrated molecular and chemical approach will be used to investigate the coupling of microbial biogeochemical processes with community structure and cold adaptation within coastal Antarctic marine sediments and within sea-ice. Overall the project expects to make an important contribution to our understanding of biological processes within low temperature habitats. DATA SET ORGANISATION: The dataset is organised on the basis of publication and is organised on the basis of the following sections: 1. SEDIMENT SAMPLES and ISOLATES Samples collected are described in terms of location, type and where data were obtained chemical features. The designation, source, media used for cultivation and isolation and availability of sediment and other related isolates are provided. Samples included are from the following locations: Clear Lake, Pendant Lake, Scale Lake, Ace Lake, Burton Lake, Ekho Lake, Organic Lake, Deep lake and Taynaya Bay (Burke Basin), Vestfold Hills region; and the Mertz Glacier Polynya region. 2. BIOMASS and ENZYME ACTIVITY DATA Biomass, numbers and extracellular enzyme activity data are provided for Bacteria and Archaea populations from Mertz Glacier Polynya shelf sediments. 3. FATTY ACID and TETRAETHER LIPID DATA Phospholipid and tetraether lipid data are provided for Mertz Glacier Polynya shelf sediments. Whole cell fatty acid data are provided for various bacterial isolates described officially as new genera or species. 4. RNA HYBRIDISATION DATA RNA hybridisation data for Mertz Glacier Polynya sediment samples is provided, including data for oligonucleotide probes specifc for total Bacteria, Archaea, the Desulfosarcina group (class Deltaproteobacteria, sulfate reducing bacterial clade), phylum Planctomycetes, phylum Bacteroidetes (Cytophaga-Flavobacterium-Bacteroides), class Gammaproteobacteria, sulfur-oxidizing and related bacteria (a subset of class Gammaproteobacteria) and Eukaryota. 5. PHYLOGENETIC DATA 16S rRNA gene sequence data are indicated including aligned datasets for three clone libraries derived from the Mertz Glacier Polynya including GenBank accession numbers. Sequence accession numbers are provided for Vestfold Hills lake sediment samples. In addition GenBank numbers are provided for denaturing gradient gel electrophoresis band sequence data from Mertz Glacier Polynya shelf sediment. Other forms of this DGGE data (banding profile analysis) are available in reference Bowman et al. 2003 (AAD ref 10971).