Venom on Ice - data collected from the CEAMARC voyage of the Aurora Australis, voyage 3 2007-2008

Accompanying excel spreadsheet details the DNA samples taken and venom glands obtained and associated date/location/depth collection site data.


Each specimen will be DNA barcoded using the diagnostic 600bp region of the mitochondrial COI gene and sequences lodged on GenBank. DNA barcoding will aid in evaluating the extent of cephalopod biodiversity including revealing cryptic species and phylogeographic structure. Confirmation of species identities is also essential as glands from multiple individuals will be required for detailed proteomic analysis of the proteins produced by the octopus posterior salivary glands. The chemical composition of the secretions will be determined through the application of multidisciplinary techniques, including cDNA library construction, mass spectrometry, molecular modelling and bioactivity testing. The studies will commence in 2008 and run for several years, being the major element in a PhD project run through Dr. Fry's laboratory.


Data_Format

Excel file with the following columns:

Sample ID

Diagnosis

Description

Other Ref

Gland Storage

Tissue Tissue Storage

Voucher

Preservation

Images

Order

Family

Genus

Species

Location

Site

Depth (start-stop)

Latitude

Longitude

Date

Time (UT)

Capture

Event

Other Information

Simple

Identification info

Alternate title
Venom on Ice - data collected from the CEAMARC voyage of the Aurora Australis, voyage 3 2007-2008
Date (Publication)
2013-02-19
Edition
2
Citation identifier
Dataset DOI

Title
Information and documentation - Digital object identifier system
Date (Publication)
2012-04-23
Citation identifier
ISO 26324:2012

Citation identifier
doi:10.4225/15/5a1247986402b

Originator

Fry, B.G.

Publisher

Australian Antarctic Data Centre

Principal investigator

FRY, BRYAN GRIEG
University of Queensland
Brisbane St Lucia
QLD
4072
Australia

Collaborator

FRY, BRYAN GRIEG
University of Queensland
Brisbane St Lucia
QLD
4072
Australia
Name
CAASM Metadata
Website
https://data.aad.gov.au/metadata/records/CEAMARC_CASO_200708_V3_Venom

Status
Completed

Custodian

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia
Topic category
  • Biota
  • Oceans

Extent

N
S
E
W


Extent

Description
Temporal Coverage

Temporal extent

TimePeriod
2007-12-22 2008-01-08
Title
Molecular Phylogeny and Evolution of the Proteins Encoded by Coleoid (Cuttlefish, Octopus, and Squid) Posterior Venom Glands.
Date (Publication)
2013
Citation identifier
DOI 10.1007/s00239-013-9552-5

Author

Tim Ruder, Kartik Sunagar, Eivind A. B. Undheim, Syed A. Ali, Tak-Cheung Wai, Dolyce H. W. Low, Timothy N. W. Jackson, Glenn F. King, Agostinho Antunes, Bryan G. Fry
Name
Journal of Molecular Evolution
Title
Genetic identification of Southern Ocean octopod samples using mtCOI.
Date (Publication)
2010
Citation identifier
doi:10.1016/j.crvi.2010.02.002

Author

Eivind Andreas Baste Undheim, Janette Ann Norman, Hanne Halkinrud Thoen, Bryan Grieg Fry
Name
Comptes Rendus Biologies
Title
Venom in Southern Ocean Octopodids (Cephalopoda: Octopoda) Properties, Ecological Importance and Adaptive Evolution.
Date (Publication)
2009

Author

Eivind Andreas Baste Undheim

Publisher

Norwegian University of Science and Technology
Name
Master Thesis
NASA/GCMD Earth Science Keywords
  • EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > CNIDARIANS > ANTHOZOANS/HEXACORALS > SEA ANEMONES
  • EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > MOLLUSKS > CEPHALOPODS
  • EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > SEGMENTED WORMS (ANNELIDS) > BRISTLE WORMS
Keywords
  • Venom
NASA/GCMD Earth Science Keywords
  • BOTTOM TRAWL
NASA/GCMD Earth Science Keywords
  • R/V AA > R/V Aurora Australis
NASA/GCMD Earth Science Keywords
  • AMD/AU
  • CEOS
  • AMD
NASA/GCMD Earth Science Keywords
  • OCEAN > SOUTHERN OCEAN
  • GEOGRAPHIC REGION > POLAR

Resource constraints

Use limitation
This metadata record is publicly available.

Resource constraints

Access constraints
licence
Other constraints
These data are publicly available for download from the provided URL. Copies of the referenced papers are available for download to AAD Staff Only.

Resource constraints

File type
Portable Network Graphic
Linkage
Creative Commons by Attribution logo

Title
Attribution 4.0 International (CC BY 4.0)
Website
https://creativecommons.org/licenses/by/4.0/legalcode

Legal code for Creative Commons by Attribution 4.0 International license

Use constraints
licence
Other constraints
This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=CEAMARC_CASO_200708_V3_Venom when using these data.
Language
English
Character encoding
UTF8

Distribution Information

Distributor

Distributor

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia

Distributor

Fees
Free
Planned available datetime
2013-02-19T00:00:00
Units of distribution
kb
Transfer size
79
Distribution format
  • Excel

OnLine resource
GET DATA

Download point for the excel spreadsheet

OnLine resource
PROJECT HOME PAGE

Home page for project

OnLine resource
VIEW RELATED INFORMATION > PUBLICATIONS

Download point for the referenced papers - AAD Staff Only

OnLine resource
VIEW RELATED INFORMATION

Citation reference for this metadata record and dataset.

Resource lineage

Statement
Date, depth, location quality excellent. 2018-09-25 - The original files was reformatted to fit OBIS/GBFI/IPT Biodiversity.AQ tracking standards, and a new datasheet "CEAMARC_Venomous_animals2007_08.csv" was created. The new dataset contains datasetID, occurrenceID, eventID, eventRemarks, locality, verbatimLatitude, verbatimLongitude, decimalLatitude, decimalLongitude, continent, countryCode, occurrenceStatus, organismQuantity, organismQuantityType, basisOfRecord, minimumDepthInMeters, maximumDepthInMeters, samplingProtocol, and associatedReferences. The lowest taxonomical rank of the species identified that could be determined is provided, after matched in WoRMS (World Register of Marine Species).
Hierarchy level
Dataset
Maintenance and update frequency
As needed
Maintenance note
Preliminary DIF created by Alicja Mosbauer 2008-04-16. 2009-09-11 - record updated by Dave Connell to include a link to the excel spreadsheet. 2013-02-19 - record updated by Dave Connell to publicly release the data. 2017-11-20 - record updated by Dave Connell - basic updates. 2018-09-25 - record updated by Dave Connell after a reformatted dataset was provided by Daniela Farias for GBIF/OBIS compliance.

Metadata

Metadata identifier
string/CEAMARC_CASO_200708_V3_Venom

Language
English
Character encoding
UTF8

Author

MOSBAUER, ALICJA
National Oceans Office
GPO Box 2139
Hobart
Tasmania
7000
AUSTRALIA

Sponsor

Australian Antarctic Division

Owner

AADC

Type of resource

Resource scope
Dataset

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
2958db2c-03ea-467e-b4a4-e2c7a99cd734

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Date (Last Revision)
2015-11-29T19:39:59

Identifier

Description
metadata.extraction_date

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
8.6

Metadata linkage
http://data.aad.gov.au/metadata/records/CEAMARC_CASO_200708_V3_Venom

Point of truth for the metadata record

Date info (Creation)
2008-04-15T00:00:00
Date info (Last Update)
2018-09-25

Metadata standard

Title
ISO 19115-3
Edition
2014
Other citation details
Version 1
Title
DIF to ISO 19115-1 Profile
 
 

Overviews

Spatial extent

N
S
E
W


Keywords


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Not available