Molecular Characterisation of Cold-Adapted Metallo-Oxotransferases from the Dimethylsulfoxide Reductase Family Expressed by Antarctic Bacteria

Metadata record for data from ASAC Project 2547

See the link below for public details on this project.


Pue (greater than 90% as determined by SDS-PAGE) samples of nitrate reductase have been isolated from the Antarctic bacterium, Shewanella gelidimarina (ACAM 456T; Accession number U85907 (16S rDNA)). The protein is ~90 kDa (similar to nitrate reductase enzymes characterised from alternate bacteria) and stains positive in an in-situ nitrate reduction (native) assay technique. The protein may be N-terminal blocked, although further sequencing experiments are required to confirm this.


This work is based upon phenotyped Antarctic bacteria (S. gelidimarina; S.frigidimarina) that was collected during other ASAC projects. (Refer: Psychrophilic Bacteria from Antarctic Sea-ice and Phospholipids of Antarctic sea ice algal communities new sources of PUFA [ASAC_708] and Biodiversity and ecophysiology of Antarctic sea-ice bacteria [ASAC_1012]).


The download file contains 4 scientific papers produced from this work - one of these papers also contains a large set of accession numbers for data stored at GenBank.

Simple

Identification info

Alternate title
Molecular Characterisation of Cold-Adapted Metallo-Oxotransferases from the Dimethylsulfoxide Reductase Family Expressed by Antarctic Bacteria
Date (Publication)
2005-03-02
Edition
1

Originator

Codd, R.

Publisher

Australian Antarctic Data Centre

Principal investigator

CODD, RACHEL
University of Sydney
School of Medical Sciences
New South Wales
Australia

Collaborator

CODD, RACHEL
University of Sydney
School of Medical Sciences
New South Wales
Australia
Name
CAASM Metadata
Other citation details
Restricted access
Website
https://data.aad.gov.au/metadata/records/ASAC_2547

Status
Completed

Custodian

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia
Topic category
  • Biota
  • Oceans

Extent

N
S
E
W


N
S
E
W


Extent

Description
Temporal Coverage

Temporal extent

TimePeriod
2004-07-01 2005-07-31

Extent

Description
Vertical Extent - Altitude

Vertical element

Minimum value
0
Maximum value
100
Identifier
urn:x-ogc:def:cs:EPSG:6499
Name
Vertical CS. Axis: height (H). Orientation: up. UoM: m.
Identifier
urn:x-ogc:def:axis:EPSG:114
Name
height

Extent

Description
Vertical Extent - Depth

Vertical element

Minimum value
0
Maximum value
10
Identifier
urn:x-ogc:def:cs:EPSG:6498
Name
Vertical CS. Axis: depth (D). Orientation: down. UoM: m.
Identifier
urn:x-ogc:def:axis:EPSG:113
Name
depth
Title
Life on Earth. Extremophiles Continue to Move the Goal Posts
Date (Publication)
2006
Citation identifier
3

Author

Packchung, A.A.H., Simpson, P.J.L., Codd, R.
Name
Environ. Chem.
Page
77-93
Title
Studies of Iron-Uptake Mechanisms in Two Bacterial Species of the Shewanella Genus Adapted to Middle-Range (Shewanella putrefaciens) or Antarctic (Shewanella gelidimarina) Temperatures
Date (Publication)
2008
Citation identifier
5

Author

Packchung, A.A.H., Soe, C.Z., Codd, R.
Name
Chemistry and Biodiversity
Page
2113-2123
Title
The periplasmic nitrate reductase in Shewanella: the resolution, distribution and functional implications of two NAP isoforms, NapEDABC and NapDAGHB
Date (Publication)
2010
Citation identifier
156

Author

Simpson, P.J.L., Richardson, D.J., Codd, R.
Name
Microbiology
Page
302-312
Title
Resolution of two native monomeric 90 kDa nitrate reductase active proteins from Shewanella gelidimarina and the sequence of two napA genes
Date (Publication)
2010
Citation identifier
398

Author

simpson, P.J.L., McKinzie, A.A., Codd, R.
Name
Biochemical and Biophysical research Communications
Page
13-18
NASA/GCMD Earth Science Keywords
  • EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > BACTERIA/ARCHAEA
Keywords
  • ACAM
  • BACTERIA
NASA/GCMD Earth Science Keywords
  • MICROSCOPES
NASA/GCMD Earth Science Keywords
  • LABORATORY
NASA/GCMD Earth Science Keywords
  • AMD/AU
  • AMD
  • CEOS
NASA/GCMD Earth Science Keywords
  • CONTINENT > ANTARCTICA
  • GEOGRAPHIC REGION > POLAR

Resource constraints

Use limitation
This metadata record is publicly available.

Resource constraints

Access constraints
licence
Other constraints
Copies of the publications, plus a list of accession numbers are available for download from the provided URL to AAD staff only.

Resource constraints

File type
Portable Network Graphic
Linkage
Creative Commons by Attribution logo

Title
Attribution 4.0 International (CC BY 4.0)
Website
https://creativecommons.org/licenses/by/4.0/legalcode

Legal code for Creative Commons by Attribution 4.0 International license

Use constraints
licence
Other constraints
This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=ASAC_2547 when using these data.
Language
English
Character encoding
UTF8

Distribution Information

Distributor

Distributor

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia

Distributor

Fees
Free
Units of distribution
kb
Transfer size
980
Distribution format
  • PDF

OnLine resource
GET DATA

Download point for the papers, plus a list of accession numbers - AAD Staff Only

OnLine resource
GET DATA

GenBank home page

OnLine resource
PROJECT HOME PAGE

Public information for ASAC project 2547

OnLine resource
VIEW RELATED INFORMATION

Citation reference for this metadata record and dataset

Resource lineage

Statement
The latitudes and longitudes provided in spatial coverage are taken from the metadata records for ASAC projects 708 and 1012.
Hierarchy level
Dataset
Maintenance and update frequency
As needed
Maintenance note
2011-02-18 - record updated by Dave Connell to link papers provided by Rachel Codd. 2016-04-29 - record updates by Dave Connell - basic updates. 2019-04-04 - record updated by Dave Connell for ISO compliance.

Metadata

Metadata identifier
string/ASAC_2547

Language
English
Character encoding
UTF8

Author

CODD, RACHEL
University of Sydney
School of Medical Sciences
New South Wales
Australia

Sponsor

Australian Antarctic Division

Owner

AADC

Type of resource

Resource scope
Dataset

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
ae7e4d73-d044-488a-91e0-e5dd434c5bba

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Date (Last Revision)
2019-04-04T12:00:48

Identifier

Description
metadata.extraction_date

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
8.6

Metadata linkage
http://data.aad.gov.au/metadata/records/ASAC_2547

Point of truth for the metadata record

Date info (Creation)
2005-03-02T00:00:00
Date info (Last Update)
2019-04-04

Metadata standard

Title
ISO 19115-3
Edition
2014
Other citation details
Version 1
Title
DIF to ISO 19115-1 Profile
 
 

Overviews

Spatial extent

N
S
E
W


N
S
E
W


Keywords


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