TemperateReefBase Geonetwork Catalogue
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data
In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au). leonie.suter@aad.gov In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au).
More information about these datasets are contained in the readme files in the dataset.
Simple
Identification info
- Alternate title
- V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data
- Date (Publication)
- 2020-02-13
- Edition
- 1
- Citation identifier
-
Dataset DOI
- Title
- Information and documentation - Digital object identifier system
- Date (Publication)
- 2012-04-23
- Citation identifier
- ISO 26324:2012
- Citation identifier
- doi:10.26179/5e44d381007e8
Originator
Publisher
Principal investigator
Principal investigator
- Name
- CAASM Metadata
- Status
- On going
Custodian
- Topic category
-
- Oceans
- Biota
Extent
))
Extent
- Description
- Temporal Coverage
Temporal extent
- TimePeriod
- 2018-03-09 2018-03-24
- NASA/GCMD Earth Science Keywords
-
- EARTH SCIENCE > OCEANS > MARINE ENVIRONMENT MONITORING
- EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON
- Keywords
-
- ENVIRONMENTAL DNA
- METABARCODING
- BIOMONITORING
- NASA/GCMD Earth Science Keywords
-
- CPR > Continuous Plankton Recorder
- ADS > Automated DNA Sequencer
- NASA/GCMD Earth Science Keywords
-
- R/V AA > R/V Aurora Australis
- LABORATORY
- NASA/GCMD Earth Science Keywords
-
- ACE/CRC
- AMD
- AMD/AU
- CEOS
- NASA/GCMD Earth Science Keywords
-
- GEOGRAPHIC REGION > POLAR
- OCEAN > SOUTHERN OCEAN
Resource constraints
- Use limitation
- This metadata record is publicly available.
Resource constraints
- Access constraints
- licence
- Other constraints
- These data are publicly available for download from the provided URL.
Resource constraints
- File type
- Portable Network Graphic
- Title
- Attribution 4.0 International (CC BY 4.0)
- Website
-
https://creativecommons.org/licenses/by/4.0/legalcode
Legal code for Creative Commons by Attribution 4.0 International license
- Use constraints
- licence
- Other constraints
- This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4556_V4_eDNA_data when using these data.
- Language
- English
- Character encoding
- UTF8
Distribution Information
Distributor
Distributor
Distributor
- Fees
- Free
- Planned available datetime
- 2020-02-13T00:00:00
- Units of distribution
- GB
- Transfer size
- 41
- Distribution format
-
- FAST Q
- OnLine resource
-
GET DATA
Download the dataset.
- OnLine resource
-
PROJECT HOME PAGE
Public information for AAS project AAS_4556
- OnLine resource
-
VIEW RELATED INFORMATION
Citation reference for this metadata record and dataset.
- Maintenance and update frequency
- As needed
- Maintenance note
- 2020-02-13 - record created by Leonie Suter.
Metadata
- Metadata identifier
- string/AAS_4556_V4_eDNA_data
- Language
- English
- Character encoding
- UTF8
Sponsor
Owner
Type of resource
- Resource scope
- Dataset
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Citation identifier
- e32853bb-5ef4-4037-8b20-1b23722854b7
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Date (Last Revision)
- 2020-02-13T14:56:35
Identifier
- Description
- metadata.extraction_date
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Citation identifier
- 8.6
- Metadata linkage
-
http://data.aad.gov.au/metadata/records/AAS_4556_V4_eDNA_data
Point of truth for the metadata record
- Date info (Creation)
- 2020-02-13T00:00:00
- Date info (Last Update)
- 2020-02-13
Metadata standard
- Title
- ISO 19115-3
- Edition
- 2014
- Other citation details
- Version 1
- Title
- DIF to ISO 19115-1 Profile
Overviews
Spatial extent
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