TemperateReefBase Geonetwork Catalogue
Short Tailed Shearwater DREAM gene sequencing fastq files
This data set includes unprocessed sample .fastq files from two separate Illumina NextSeq runs, labelled as 'Run_1' and 'Run_2', respectively.
Sample names: e.g. STS15059, 'STS' is the abbreviation of Short-tailed shearwater. The first two digits of the numeric refer to the year of collection e.g. '15' = 2015. Finally, the following number refers to the sequential unique ID for that year, e.g. '059' is the fifty-ninth sample for the years' collection.
Leg bands are also recorded and are generally a 5-digit number and are unique to the individual bird. Longitudinal samples can be identified using these band IDs. E.g. in Run_2, an individual with the band number: 52196, was collected in 2015 as 'STS15065' and again in 2017 as 'STS17044'.
Run_1: N = 35 individual samples are split across 4 lanes e.g. 'STS16020_S35_L001(/L002/L003/L004)_R1_001/fastq' and need to be merged before conversion to .fasta format and downstream analysis.
Run_2: N = 36 individual samples were provided as a single merged file from the service provider, e.g. 'STS15059_S34_R1_001.fastq'.
Sample_info: This excel spreadsheet has information on samples as follows:
'Band': 5-digit number on leg band.
'Sample': Sample number within run.
'UID': The unique ID for collection year e.g. STS15007.
'Age': The known-age of the animal rounded to whole year.
'Index (NebNext)': The NEB index used for NGS sample identification.
'Note': Additional information on if a sample was a between or within run replicate or longitudinal replicate.
Analysis of these data will be published in: [tba: R. De Paoli-Iseppi et al. 2018. Molecular Ecology Resources].
Simple
Identification info
- Alternate title
- Short Tailed Shearwater DREAM gene sequencing fastq files
- Date (Publication)
- 2018-10-26
- Edition
- 1
- Citation identifier
-
Dataset DOI
- Title
- Information and documentation - Digital object identifier system
- Date (Publication)
- 2012-04-23
- Citation identifier
- ISO 26324:2012
- Citation identifier
- doi:10.26179/5bd28a9be61d9
Originator
Publisher
Principal investigator
Principal investigator
Collaborator
Collaborator
- Name
- CAASM Metadata
- Purpose
- Raw .fastq sequence files for replication of published results or other genomic analyses.
- Status
- On going
Custodian
- Topic category
-
- Biota
- Oceans
Extent
))
Extent
- Description
- Temporal Coverage
Temporal extent
- TimePeriod
- 2015-11-01 2017-12-31
- NASA/GCMD Earth Science Keywords
-
- EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > BIRDS > ALBATROSSES/PETRELS AND ALLIES
- Keywords
-
- DREAM
- DNA
- DNA METHYLATION
- CHRONOLOGICAL AGE
- SHORT-TAILED SHEARWATER
- NASA/GCMD Earth Science Keywords
-
- ADS > Automated DNA Sequencer
- NASA/GCMD Earth Science Keywords
-
- LABORATORY
- NASA/GCMD Earth Science Keywords
-
- AMD/AU
- AMD
- CEOS
- NASA/GCMD Earth Science Keywords
-
- GEOGRAPHIC REGION > POLAR
- OCEAN > SOUTHERN OCEAN
- CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Tasmania
- CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Flinders Island
Resource constraints
- Use limitation
- This metadata record is publicly available.
Resource constraints
- Access constraints
- licence
- Other constraints
- These data are publicly available, however owing to their size are only available on request to the Australian Antarctic Data Centre.
Resource constraints
- File type
- Portable Network Graphic
- Title
- Attribution 4.0 International (CC BY 4.0)
- Website
-
https://creativecommons.org/licenses/by/4.0/legalcode
Legal code for Creative Commons by Attribution 4.0 International license
- Use constraints
- licence
- Other constraints
- This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM when using these data.
- Language
- English
- Character encoding
- UTF8
Distribution Information
Distributor
Distributor
Distributor
- Fees
- Free
- Planned available datetime
- 2018-10-26T00:00:00
- Units of distribution
- GB
- Transfer size
- 13
- Distribution format
-
- fastq
- OnLine resource
-
GET DATA
Request a copy of the data
- OnLine resource
-
PROJECT HOME PAGE
Public information for AAS project AAS_4014
- OnLine resource
-
VIEW RELATED INFORMATION
Citation reference for this metadata record and dataset.
- Maintenance and update frequency
- As needed
- Maintenance note
- 2018-10-18 - record created by Ricardo de Paoli-Iseppi.
Metadata
- Metadata identifier
- string/AAS_4014_shearwater_DREAM
- Language
- English
- Character encoding
- UTF8
Author
Sponsor
Owner
Type of resource
- Resource scope
- Dataset
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Citation identifier
- 64fafa41-0300-408b-af42-cab0b2efa453
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Date (Last Revision)
- 2021-11-17T12:22:29
Identifier
- Description
- metadata.extraction_date
Alternative metadata reference
- Title
- gov.nasa.gsfc.gcmd
- Citation identifier
- 8.6
- Metadata linkage
-
http://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM
Point of truth for the metadata record
- Date info (Creation)
- 2018-10-18T00:00:00
- Date info (Last Update)
- 2018-10-18
Metadata standard
- Title
- ISO 19115-3
- Edition
- 2014
- Other citation details
- Version 1
- Title
- DIF to ISO 19115-1 Profile
Overviews
Spatial extent
Provided by
