Abatus Microsatellites data set

The present data set corresponds to the genotypes for seven microsatellite markers for three Antarctic sea urchin species of the genus Abatus. Sea urchin individuals were collected in five sites separated by up to 5 km in the near-shore area surrounding Davis Station in the Vestfold Hills Region, East Antarctica. For each microsatellite loci, the size of each allele was scored (in base pairs) using the CEQ 8000 Genetic Analysis System software v.8.0. Fragments were separated on an automated sequencer (CEQ 8000, Beckman Coulter) in the Central Science Laboratory at University of Tasmania.

Simple

Identification info

Alternate title
Abatus Microsatellites data set
Date (Publication)
2016-09-08
Edition
2
Citation identifier
Dataset DOI

Title
Information and documentation - Digital object identifier system
Date (Publication)
2012-04-23
Citation identifier
ISO 26324:2012

Citation identifier
doi:10.4225/15/57D0F91BB1242

Originator

Carrea, C., Burridge, C., King, C.K. and Miller, K.

Publisher

Australian Antarctic Data Centre

Principal investigator

CARREA, CECILIA
University of Tasmania
Sandy Bay Campus
Private Bag 55
Hobart
Tasmania
7001
Australia

Principal investigator

BURRIDGE, CHRISTOPHER
University of Tasmania
Private Bag 55
Hobart
Tasmania
7001
Australia

Principal investigator

KING, CATHERINE K.
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia

Principal investigator

MILLER, KAREN
Australian Institute of Marine Science
1526 Cape Cleveland Road
Cape Cleveland
QLD
4810
Australia

Collaborator

CARREA, CECILIA
University of Tasmania
Sandy Bay Campus
Private Bag 55
Hobart
Tasmania
7001
Australia

Collaborator

BURRIDGE, CHRISTOPHER
University of Tasmania
Private Bag 55
Hobart
Tasmania
7001
Australia

Collaborator

KING, CATHERINE K.
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia

Collaborator

MILLER, KAREN
Australian Institute of Marine Science
1526 Cape Cleveland Road
Cape Cleveland
QLD
4810
Australia
Name
CAASM Metadata
Website
https://data.aad.gov.au/metadata/records/AAS_3051_AbatusMicrosatellites

Purpose
Main goal was to study and compare the fine-scale population structure and demographic history of three species of Antarctic sea urchins (Abatus ingens, Abatus shackletoni and Abatus philippii) in the near-shore area surrounding the Australian Reseach Sation Davis in East Antarctica. A secondary goal was to test potential impacts of pollution from the Davis Station wastewater discharge on the genetic diversity and effective population size of these species.
Status
Completed

Custodian

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia
Topic category
  • Environment
  • Biota
  • Oceans

Extent

N
S
E
W


Extent

Description
Temporal Coverage

Temporal extent

TimePeriod
2009-10-01 2013-03-31

Extent

Description
Vertical Extent - Depth

Vertical element

Minimum value
0
Maximum value
25
Identifier
urn:x-ogc:def:cs:EPSG:6498
Name
Vertical CS. Axis: depth (D). Orientation: down. UoM: m.
Identifier
urn:x-ogc:def:axis:EPSG:113
Name
depth
Title
Population structure and long-term decline in three species of heart urchins (Abatus spp.) in the Vestfold Hills, East Antarctica.
Date (Publication)
2016
Citation identifier
545

Citation identifier
doi:10.3354/meps11573

Author

Carrea C., Burridge C.P., King C.K. and Miller K.J.
Name
Marine Ecology Progress Series
Page
227-238
Title
Conservation Genetics of Antarctic Heart Urchins (Abatus spp.)
Date (Publication)
2015

Author

Carrea, C.

Publisher

University of Tasmania
Name
Masters Thesis
NASA/GCMD Earth Science Keywords
  • EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS
  • EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS
  • EARTH SCIENCE > OCEANS > WATER QUALITY > OCEAN CONTAMINANTS
  • EARTH SCIENCE > HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > SEWAGE DISPOSAL
Keywords
  • OUTFALL PIPE - DAVIS STATION
NASA/GCMD Earth Science Keywords
  • ADS > Automated DNA Sequencer
NASA/GCMD Earth Science Keywords
  • FIELD INVESTIGATION
  • FIELD SURVEYS
  • LABORATORY
NASA/GCMD Earth Science Keywords
  • AMD/AU
  • AMD
  • CEOS
NASA/GCMD Earth Science Keywords
  • GEOGRAPHIC REGION > POLAR

Resource constraints

Use limitation
This metadata record is publicly available.

Resource constraints

Access constraints
licence
Other constraints
These data are publicly available for download from the provided URL. Copies of the referenced papers are also available for download from the provided URL to AAD staff only.

Resource constraints

File type
Portable Network Graphic
Linkage
Creative Commons by Attribution logo

Title
Attribution 4.0 International (CC BY 4.0)
Website
https://creativecommons.org/licenses/by/4.0/legalcode

Legal code for Creative Commons by Attribution 4.0 International license

Use constraints
licence
Other constraints
This data set conforms to the CCBY Attribution License (http://creativecommons.org/licenses/by/4.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_3051_AbatusMicrosatellites when using these data.
Language
English
Character encoding
UTF8

Distribution Information

Distributor

Distributor

AU/AADC > Australian Antarctic Data Centre, Australia - AADC, DATA OFFICER (DATA CENTER CONTACT)
Australian Antarctic Division
203 Channel Highway
Kingston
Tasmania
7050
Australia

Distributor

Fees
Free
Planned available datetime
2016-09-08T00:00:00

Distributor

Fees
Free
Planned available datetime
2016-09-08T00:00:00
Units of distribution
kb
Transfer size
8
Distribution format
  • Excel, csv

Units of distribution
MB
Transfer size
3
Distribution format
  • PDF

OnLine resource
GET DATA

Download point for the data

OnLine resource
PROJECT HOME PAGE

Public information for AAS project AAS_3051

OnLine resource
VIEW RELATED INFORMATION > PUBLICATIONS

Download copies of the referenced papers - AAD Staff Only

OnLine resource
VIEW RELATED INFORMATION

Citation reference for this metadata record and dataset.

Resource lineage

Statement
Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep OF, OF3, OF4 equal or less than 4 m deep. Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet "AbatusUrchin_microsatellites.csv" provides the dataset ID, verbatim latitude and verbatim longitude that were converted to decimal latitude and longitude, also provided. Taxonomical organisation to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Also provides other parameters such as localisation, sampling depth, occurrence, and date of event.
Hierarchy level
Dataset
Maintenance and update frequency
As needed
Maintenance note
2017-05-11 - record created by Cecilia Carrea. 2017-05-11 - record updated by Dave Connell to correct contact information for Karen Miller. 2018-06-27 - record updated by Dave Connell after an updated dataset was provided by Daniela Farias. 2019-03-13 - record updated by Dave Connell for ISO compliance.

Metadata

Metadata identifier
string/AAS_3051_AbatusMicrosatellites

Language
English
Character encoding
UTF8

Author

CARREA, CECILIA
University of Tasmania
Sandy Bay Campus
Private Bag 55
Hobart
Tasmania
7001
Australia

Sponsor

Australian Antarctic Division

Owner

AADC
Title
Parent Metadata Record
Citation identifier
ASAC_3051

Type of resource

Resource scope
Dataset

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
04c0981c-7823-4c82-9b60-214aa49eba45

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Date (Last Revision)
2019-03-13T14:32:19

Identifier

Description
metadata.extraction_date

Alternative metadata reference

Title
gov.nasa.gsfc.gcmd
Citation identifier
8.6

Metadata linkage
http://data.aad.gov.au/metadata/records/AAS_3051_AbatusMicrosatellites

Point of truth for the metadata record

Date info (Creation)
2016-09-05T00:00:00
Date info (Last Update)
2019-03-13

Metadata standard

Title
ISO 19115-3
Edition
2014
Other citation details
Version 1
Title
DIF to ISO 19115-1 Profile
 
 

Overviews

Spatial extent

N
S
E
W


Keywords


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